Search results for "methods [Gene Expression Profiling]"
showing 10 items of 838 documents
ASOHF: a new adaptive spherical overdensity halo finder
2010
We present and test a new halo finder based on the spherical overdensity (SO) method. This new adaptive spherical overdensity halo finder (ASOHF) is able to identify dark matter haloes and their substructures (subhaloes) down to the scales allowed by the analysed simulations. The code has been especially designed for the adaptive mesh refinement cosmological codes, although it can be used as a stand-alone halo finder for N-body codes. It has been optimised for the purpose of building the merger tree of the haloes. In order to verify the viability of this new tool, we have developed a set of bed tests that allows us to estimate the performance of the finder. Finally, we apply the halo finder…
Cosmic magnetic fields with masclet: an application to galaxy clusters
2020
We describe and test a new version of the adaptive mesh refinement (AMR) cosmological code MASCLET. The new version of the code includes all the ingredients of its previous version plus a description of the evolution of the magnetic field under the approximation of the ideal magneto-hydrodynamics (MHD). To preserve the divergence-free condition of MHD, the original divergence cleaning algorithm of Dedner et al. (2002) is implemented. We present a set of well-known 1D and 2D tests, such as several shock-tube problems, the fast rotor and the Orszag-Tang vortex. The performance of the code in all the tests is excellent with estimated median relative errors of $\nabla \cdot {\bf B}$ in the 2D t…
Unravelling cosmic velocity flows: a Helmholtz-Hodge decomposition algorithm for cosmological simulations
2021
In the context of intra-cluster medium turbulence, it is essential to be able to split the turbulent velocity field in a compressive and a solenoidal component. We describe and implement a new method for this aim, i.e., performing a Helmholtz-Hodge decomposition, in multi-grid, multi-resolution descriptions, focusing on (but not being restricted to) the outputs of AMR cosmological simulations. The method is based on solving elliptic equations for a scalar and a vector potential, from which the compressive and the solenoidal velocity fields, respectively, are derived through differentiation. These equations are addressed using a combination of Fourier (for the base grid) and iterative (for t…
Achromatic Fresnel diffraction patterns
1993
Abstract A novel method for obtaining a single, but arbitrary, achromatic Fresnel diffraction pattern of any pupil with broadband parallel illumination is presented. The optical device simply consists of an achromatic objective and an on-axis zone plate. A criterion for selecting the system parameters in order to minimize the residual chromatic aberrations is given. The recording of the selected diffraction field is obtained with low chromatic aberrations even for white-light illumination. An experimental verification is shown to illustrate this approach.
Spectral anomalies in focused waves of different Fresnel numbers
2004
Light propagation induces remarkable changes in the spectrum of focused diffracted beams. We show that spectral changes take place in the vicinity of phase singularities in the focal region of spatially coherent, polychromatic spherical waves of different Fresnel numbers. Instead of the Debye formulation, we use the Kirchhoff integral to evaluate the focal field accurately. We find that as a result of a decrease in the Fresnel number, some cylindrical spectral switches are geometrically transformed into conical spectral switches.
White-light Fourier transformer with low chromatic aberration.
1992
A simple Fourier transformation system working with broadband parallel illumination is presented. The proposed setup, consisting of two on-axis zone plates and an achromatic objective, allows us to obtain the achromatic Fourier transform representation of the input at a finite distance with a low chromatic aberration. The discussion of the system, using the Fresnel diffraction theory, leads to an analytical expression to evaluate the transversal and longitudinal chromatic aberrations. It is shown that the resulting chromatic aberrations for typical values of the involved parameters are less than 1% over the entire visible spectrum.
Scale-tunable optical correlation with natural light
2008
We describe two different scale-tunable optical correlators working under totally incoherent light. They behave as spatially incoherent wavelength-independent imaging systems with an achromatic point-spread function (PSF). In both cases it is possible to adapt the scale of the achromatic PSF, i.e., to modify the scaling factor of the PSF and preserve the chromatic compensation, by one's shifting the input along the optical axis. The remarkable properties of these systems allow us to carry out a scale-tunable color pattern-recognition experiment with natural light.
Focal squeeze in axicons
2005
The on-axis irradiance distribution of a truncated conical wavefront is evaluated in terms of the Fresnel number of the focusing geometry. In agreement with geometrical optics, a focal line of increasing intensity is generated for extremely high Fresnel numbers. Otherwise clear deviations may be observed for the position of the maximum irradiance along the optical axis. A remarkable focal squeeze appears and, for decreasing Fresnel numbers, this effect manifests stronger. An analytical formula is provided for the fast evaluation of the focal squeeze.
Debye representation of dispersive focused waves
2006
We report on a matrix-based diffraction integral that evaluates the focal field of any diffraction-limited axisymmetric complex system. This diffraction formula is a generalization of the Debye integral applied to apertured focused beams, which may be accommodated to broadband problems. Longitudinal chromatic aberration may limit the convenience of the Debye formulation and, additionally, spatial boundaries of validity around the focal point are provided. Fresnel number is reformulated in order to guarantee that the focal region is entirely into the region of validity of the Debye approximation when the Fresnel number of the focusing geometry largely exceeds unity. We have applied the matri…
Coherence loss in phase-referenced VLBI observations
2010
Context. Phase-referencing is a standard calibration technique in radio interferometry, particularly suited for the detection of weak sources close to the sensitivity limits of the interferometers. However, effects from a changing atmosphere and inaccuracies in the correlator model may affect the phase-referenced images, and lead to wrong estimates of source flux densities and positions. A systematic observational study of signal decoherence in phase-referencing and its effects in the image plane has not been performed yet. Aims. We systematically studied how the signal coherence in Very-Long-Baseline-Interferometry (VLBI) observations is affected by a phase-reference calibration at differe…